News
Some news from our lab:
2024-11-06 - Congratulations to Iva and Tamas on organizing a successfull bioinformatics course at CeMM!
The annual 2-week course at CeMM is essential to train all CeMM PhD program students and this year Iva and Tamas were centrally involved in the organization, planning and teaching of the course.
2024-10-28 - 'cytomine_utils' software package open sourced!
A package with utilities to interact with Cytomine APIs: https://github.com/RendeiroLab/cytomine_utils.
2024-10-11 - Iva was at the Spatial Biology Symposium in Milan, Italy
2024-10-04 - Andre gave a talk at the IX Siena Think Tank meeting, on a new vision of Immunooncology in Siena, Italy
2024-10-02 - 'LazySlide' and 'WSIData' open sourced!
The two packages form a new, modular and scalable framework for whole slide image analysis, bringing the interoperability, efficiency, and familiarity of single-cell analysis in scverse: https://github.com/RendeiroLab/LazySlide, https://github.com/RendeiroLab/WSIData.
2024-10-01 - 'wsi' open sourced!
A Python package for the processing of whole slide histopathological images is now open sourced here!
2024-09-23 - Welcome to Ariadna!
Ariadna Villanueva Marijuan will join the CeMM PhD Program and work on the intersection of tissue organization genetics.
2024-09-18 - Welcome to Tamas!
Tamas Veres will join the CeMM PhD Program and work on the intersection of morphological and molecular changes to tissue in health and disease.
2024-09-13 - Congratulations to Lisa on the lab's first NGS samples!
We are super excited our first wet lab experiment was a success!
2024-09-10 - Yimin gave a workshop at the scverse conference 2024!
Yimin's talk and workshop on declarative creation of composable visualization for omics data at the scverse conference 2024 was a success.
2024-08-16 - We released a balanced dataset of healthy tissue for deep learning model training.
The dataset of histological slides from the GTEx project that has been balanced for 3 major factors (organ, sex, and age bracket) that may be useful to train models in supervised or self-supervised modes. https://zenodo.org/doi/10.5281/zenodo.13330658
2024-06-29 - Andre gave a talk at the VitaDAO minisymposium: Ain across scales and systems in Vienna, Austria
2024-05-31 - Andre gave a talk at the Department of Mathematics of the University of Oxford, UK
2024-04-01 - Congratulations to the team for organizing the 2024 EU-LIFE community meeting in Vienna, Austria!
It was challenging, but a very worth experience to organize the 2024 EU-LIFE community meeting which had the theme of artificial intelligence.
2024-03-30 - Our 'Marsilea' pre-print is now online!
Yimin led a work on a framework and tool for an intuitive generalized visualization paradigm for complex datasets. Check if out at BioRxiv!
2024-03-02 - Thank you to the Vienna Science and Technology foundation (WWTF) for the awarded grant.
We have been awarded a grant by the Vienna Science and Technology foundation (WWTF) for a project led by Julianne Winkler and together with Zsuzsanna Bago-Horvath to work on the multiscale discovery of cellular and microanatomical determinants of metastasis. Our great appreciation to the WWTF for supporting us!
2024-03-01 - We are now also part of the Ludwig Boltzmann Institute for Network Medicine at the University of Vienna!
We are super excited to have been awarded a grant by the Ludwig Boltzmann association to participate in the newly formed Institute for Network Medicine, headed by Jörg Mensche.
2024-02-01 - Welcome to Lisa!
Lisa Kleissl, a former PhD student of Georg Stary at the Mecical University of Vienna will work on skin aging.
2024-01-21 - Andre gave a talk at the Keystone Symposia on Single-Cell Biology: Tissue Genomics, Technologies and Disease, Whistler, Canada
2023-10-01 - Andre gave a talk at the 33rd Annual Conference of the German Society for Cytometry in Berlin, Germany
2023-09-01 - Andre gave a talk at the 3rd International Danube Symposium on Whole Person Research in Vienna, Austria
2022-10-01 - Andre gave a talk at the VBC PhD Symposium 'Pushing Boundaries' in Vienna, Austria
2022-09-19 - Welcome to Ernesto and Iva!
Our first two PhD students will be participating in the CeMM PhD Program and work on the principles of tissue organization in health an disease.